Beagle

Beagle

0/5
ver. 5.4
0,2 Mb (downloads: 3)

With the help of this utility, you can perform missing data imputation on a PC. You have the option to enter command line arguments and specify parameters.

Download
Update date:
27.12.2023
Developer:
Brian Browning
Windows version:
Windows 7

Beagle is a program package for Windows which allows you to phase genotypes and impute ungenotyped markers. The latest iteration showcases enhance memory utilization and computational efficiency, particularly beneficial for the analysis of extensive sequence datasets.

General notes

To run the application, you need to have Java version 1.8 or later installed. You can verify the deployment by entering a special command prompt. The latest interpreter can be downloaded from the official website. Please note that attempting to launch Beagle with an outdated version will result in an error.

The utility relies on a customized iteration of the Li and Stephens haplotype frequency model. It optimizes both computational efficiency and storage requirements. The algorithm is documented in various scientific papers and has gained widespread adoption in the field of population genetics.

Input and output

The software employs Variant Call Format for both input and output of genotype data. To ensure accurate analysis, it is essential that pseudoautosomal and non pseudoautosomal X chromosome genotypes are segregated into distinct input files and processed separately.

Two output items are generated. The log file provides a comprehensive summary of the analysis. It encompasses details such as the program version, command line arguments, and the computational time involved. To perform haplotype analysis, you may try a tool called Haploview.

Features

  • free to download and use;
  • compatible with modern Windows versions;
  • enables you to phase and impute genotypes;
  • you can enter various command line arguments;
  • it is possible to specify multiple parameters.
Download
0,2 Mb (downloads: 3)
Add comment
0/5
Similar programs
BodyWorks BodyWorks
Windows 3.1 Free
0/5

Using this educational platform you can view anatomically correct interactive 3D models of the human body to study individual organs, muscles and bones.

ver 5.0
Design-Expert Design-Expert
Windows 10 Paid program
0/5

The software solution gives users the means to design and interpret a variety of experiments. There is support for 2D and 3D scatterplots, histograms, and more.

ver 23.1.1
Synergy Sports Editor Synergy Sports Editor
Windows 10 Paid program
0/5

Using this powerful utility, you can make custom edits of basketball footage on a computer. Moreover, you have the option to view professional analyses.

ver 11.3.7.40
Wimba Diploma Wimba Diploma
Windows XP Free
0/5

With the help of this program educators can create and manage custom assessments. There is support for various question types and flexible test delivery options.

ver 6.72
Power BibleCD Power BibleCD
Windows XP Paid program
0/5

Thanks to this convenient app, users can study the Bible on their computer. It is also possible to write personal notes and look up words in a dictionary.

ver 5.9
Avid Xpress Pro Avid Xpress Pro
Windows XP Free
0/5

Using this application you can edit video clips in a wide variety of common file formats. There is support for GPU accelerated rendering and playback.

ver 5.8
EDraw Max EDraw Max
Windows 7 Free
0/5

Thanks to this application, users can develop diagrams, plans, charts, and more. Additionally, there is support for customizing preset assets and templates.

ver 13.0.3
Photolightning Photolightning
Windows XP Paid program
0/5

Thanks to this handy utility, users can preview and customize photographs on their computer. There is support for rotating, cropping, and applying effects.

ver 5.5